STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166409Si:ch211-114c12.2. (621 aa)    
Predicted Functional Partners:
pdhb
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.981
dld
Dihydrolipoyl dehydrogenase.
   
 0.944
pdhx
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 0.921
dlat
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 0.921
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.845
dlst
Dihydrolipoamide S-succinyltransferase.
   
 0.799
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
  
 0.739
LOC101160253
Oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide).
   
 0.732
OGDH
Oxoglutarate dehydrogenase.
   
 0.732
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 0.725
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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