Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165568Uncharacterized protein. (645 aa)    
Predicted Functional Partners:
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.990
LOC101155815
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.964
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.964
LOC101155037
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.912
nrros
Negative regulator of reactive oxygen species.
  
  
 
0.910
lrrc32
Leucine rich repeat containing 32.
  
  
 
0.908
itgb8
Integrin beta; Belongs to the integrin beta chain family.
   
 0.646
emsy
EMSY transcriptional repressor, BRCA2 interacting.
      
 0.467
commd7
COMM domain containing 7.
     
 0.458
lrrc31
Leucine rich repeat containing 31.
    
 
 0.414
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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