zranb2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zranb2

Zinc finger, RAN-binding domain containing 2. (355 aa)

Predicted Functional Partners:

cd59

0.813

gtf2f1

0.692

H2LBV2_ORYLA

0.679

fosb

0.676

rpl32

0.673

taf12

0.662

LOC101156841

0.649

taf3

0.646

polr2b

0.638

LOC110016899

0.637

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LBV2_ORYLA	gtf2f1	ENSORLP00000003381	ENSORLP00000044821	RRM domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.616
H2LBV2_ORYLA	polr2b	ENSORLP00000003381	ENSORLP00000025492	RRM domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.660
H2LBV2_ORYLA	zranb2	ENSORLP00000003381	ENSORLP00000008191	RRM domain-containing protein.	Zinc finger, RAN-binding domain containing 2.	0.679
LOC101156841	gtf2f1	ENSORLP00000044503	ENSORLP00000044821	Transcription initiation factor TFIID subunit.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.954
LOC101156841	polr2b	ENSORLP00000044503	ENSORLP00000025492	Transcription initiation factor TFIID subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.881
LOC101156841	taf12	ENSORLP00000044503	ENSORLP00000027474	Transcription initiation factor TFIID subunit.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC101156841	taf3	ENSORLP00000044503	ENSORLP00000004840	Transcription initiation factor TFIID subunit.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.996
LOC101156841	zranb2	ENSORLP00000044503	ENSORLP00000008191	Transcription initiation factor TFIID subunit.	Zinc finger, RAN-binding domain containing 2.	0.649
LOC110016899	fosb	ENSORLP00000045846	ENSORLP00000044007	Thrombopoietin.	FBJ murine osteosarcoma viral oncogene homolog B.	0.457
LOC110016899	rpl32	ENSORLP00000045846	ENSORLP00000036808	Thrombopoietin.	Ribosomal protein L32.	0.558
LOC110016899	zranb2	ENSORLP00000045846	ENSORLP00000008191	Thrombopoietin.	Zinc finger, RAN-binding domain containing 2.	0.637
cd59	zranb2	ENSORLP00000023204	ENSORLP00000008191	CD59 molecule (CD59 blood group).	Zinc finger, RAN-binding domain containing 2.	0.813
fosb	LOC110016899	ENSORLP00000044007	ENSORLP00000045846	FBJ murine osteosarcoma viral oncogene homolog B.	Thrombopoietin.	0.457
fosb	rpl32	ENSORLP00000044007	ENSORLP00000036808	FBJ murine osteosarcoma viral oncogene homolog B.	Ribosomal protein L32.	0.558
fosb	zranb2	ENSORLP00000044007	ENSORLP00000008191	FBJ murine osteosarcoma viral oncogene homolog B.	Zinc finger, RAN-binding domain containing 2.	0.676
gtf2f1	H2LBV2_ORYLA	ENSORLP00000044821	ENSORLP00000003381	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RRM domain-containing protein.	0.616
gtf2f1	LOC101156841	ENSORLP00000044821	ENSORLP00000044503	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor TFIID subunit.	0.954
gtf2f1	polr2b	ENSORLP00000044821	ENSORLP00000025492	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
gtf2f1	taf12	ENSORLP00000044821	ENSORLP00000027474	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.901
gtf2f1	taf3	ENSORLP00000044821	ENSORLP00000004840	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.913