STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105357260Melatonin receptor 1C; Belongs to the G-protein coupled receptor 1 family. (349 aa)    
Predicted Functional Partners:
LOC101174111
Solute carrier family 36 member 1.
      
 0.824
fat2
FAT atypical cadherin 2.
      
 0.687
fat1
FAT atypical cadherin 1a.
      
 0.676
LOC100049216
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
      
 0.543
LOC101171658
Thyroid stimulating hormone subunit beta a.
   
 
 0.490
gpr18
G protein-coupled receptor 18.
    
  0.487
LOC101159115
Uncharacterized protein.
   
  
 0.484
LOC101171061
Oxoglutarate (alpha-ketoglutarate) receptor 1a, tandem duplicate 2.
   
 
 
0.441
tac1
Uncharacterized protein.
     
 0.437
LOC101159928
D site albumin promoter binding protein a.
      
 0.435
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.