STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chid1Chitinase domain containing 1; Belongs to the glycosyl hydrolase 18 family. (393 aa)    
Predicted Functional Partners:
ctbs
Chitobiase, di-N-acetyl-; Belongs to the glycosyl hydrolase 18 family.
      
 0.816
timm21
Translocase of inner mitochondrial membrane 21.
      
 0.716
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.704
pgm3
Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O- glycosylation; Belongs to the phosphohexose mutase family.
      
 0.704
stab1
Stabilin 1.
      
 0.702
slc35b4
Solute carrier family 35 member B4.
      
 0.694
psap
Prosaposin; Prosaposin: Behaves as a myelinotrophic and neurotrophic factor, these effects are mediated by its G-protein-coupled receptors, GPR37 and GPR37L1, undergoing ligand-mediated internalization followed by ERK phosphorylation signaling.
     
 0.671
LOC101161410
Surfactant protein Bb.
     
 0.671
LOC101158848
Chitinase, acidic.1; Belongs to the glycosyl hydrolase 18 family.
      
 0.651
RAB29
RAB29, member RAS oncogene family.
      
 0.647
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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