STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kiaa1324Si:ch211-163l21.8. (990 aa)    
Predicted Functional Partners:
LOC101172731
Uncharacterized protein.
      
 0.536
tmem9b
TMEM9 domain family, member B.
    
 
 0.535
hace1
HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1.
    
 
 0.466
LOC101159951
Cytochrome c oxidase assembly homolog 11 (yeast).
      
 0.463
LOC101156233
Eukaryotic translation initiation factor 4, gamma 2b.
    
 
 0.430
LOC101154771
Uncharacterized protein.
    
 
 0.425
msi1
Uncharacterized protein.
    
 
 0.425
dennd5a
DENN/MADD domain containing 5A.
      
 0.424
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
     
 0.424
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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