Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc16a1Solute carrier family 16 member 1a. (461 aa)    
Predicted Functional Partners:
emb
Embigin.
    
 0.906
LOC101170020
MFS domain-containing protein.
  
  
 
0.901
ENSORLP00000044940
Purkinje cell protein 4 like 1.
      
 0.534
LOC101164395
Solute carrier family 5 member 8, like; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.508
riok2
RIO domain-containing protein.
      
 0.498
slc16a3
Solute carrier family 16 member 3.
     
  0.479
igfals
Insulin-like growth factor binding protein, acid labile subunit.
   
  
 0.466
GPR119
G protein-coupled receptor 119; Belongs to the G-protein coupled receptor 1 family.
      
 0.429
LOC101163230
Ribosomal protein L15; Belongs to the nuclear hormone receptor family.
   
 
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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