Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LQ77_ORYLAUncharacterized protein. (145 aa)    
Predicted Functional Partners:
notch1
Notch receptor 1b.
    
 0.778
LOC101171596
Notch receptor 1a.
    
 0.778
LOC101162450
Notch receptor 3.
   
 0.664
eys
Uncharacterized protein.
   
 0.660
ENSORLP00000042299
Uncharacterized protein.
 
      0.656
mib1
Mindbomb E3 ubiquitin protein ligase 1.
   
 0.580
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.547
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.494
LOC101157631
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.446
maml1
Mastermind-like transcriptional coactivator 1.
    
 0.435
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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