LOC101173732 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101173732

Voltage-dependent anion channel 2. (283 aa)

Predicted Functional Partners:

LOC101163991

0.977

LOC101171421

0.977

vdac1

0.953

prkn

0.872

psma1

0.864

PPIF

0.850

LOC101175187

0.823

ppid

0.820

LOC101169311

0.777

LOC101172049

0.777

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163991	LOC101169311	ENSORLP00000029274	ENSORLP00000015599	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Translocase of outer mitochondrial membrane 20.	0.442
LOC101163991	LOC101171421	ENSORLP00000029274	ENSORLP00000030127	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.901
LOC101163991	LOC101172049	ENSORLP00000029274	ENSORLP00000026509	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Translocase of outer mitochondrial membrane 20b.	0.442
LOC101163991	LOC101173732	ENSORLP00000029274	ENSORLP00000008222	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Voltage-dependent anion channel 2.	0.977
LOC101163991	LOC101175187	ENSORLP00000029274	ENSORLP00000008393	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.852
LOC101163991	PPIF	ENSORLP00000029274	ENSORLP00000011152	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.883
LOC101163991	ppid	ENSORLP00000029274	ENSORLP00000037163	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Peptidylprolyl isomerase D.	0.919
LOC101163991	vdac1	ENSORLP00000029274	ENSORLP00000039231	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Voltage-dependent anion channel 1.	0.992
LOC101169311	LOC101163991	ENSORLP00000015599	ENSORLP00000029274	Translocase of outer mitochondrial membrane 20.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.442
LOC101169311	LOC101171421	ENSORLP00000015599	ENSORLP00000030127	Translocase of outer mitochondrial membrane 20.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.442
LOC101169311	LOC101172049	ENSORLP00000015599	ENSORLP00000026509	Translocase of outer mitochondrial membrane 20.	Translocase of outer mitochondrial membrane 20b.	0.901
LOC101169311	LOC101173732	ENSORLP00000015599	ENSORLP00000008222	Translocase of outer mitochondrial membrane 20.	Voltage-dependent anion channel 2.	0.777
LOC101169311	prkn	ENSORLP00000015599	ENSORLP00000045716	Translocase of outer mitochondrial membrane 20.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.976
LOC101169311	vdac1	ENSORLP00000015599	ENSORLP00000039231	Translocase of outer mitochondrial membrane 20.	Voltage-dependent anion channel 1.	0.881
LOC101171421	LOC101163991	ENSORLP00000030127	ENSORLP00000029274	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.901
LOC101171421	LOC101169311	ENSORLP00000030127	ENSORLP00000015599	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Translocase of outer mitochondrial membrane 20.	0.442
LOC101171421	LOC101172049	ENSORLP00000030127	ENSORLP00000026509	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Translocase of outer mitochondrial membrane 20b.	0.442
LOC101171421	LOC101173732	ENSORLP00000030127	ENSORLP00000008222	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Voltage-dependent anion channel 2.	0.977
LOC101171421	LOC101175187	ENSORLP00000030127	ENSORLP00000008393	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.852
LOC101171421	PPIF	ENSORLP00000030127	ENSORLP00000011152	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.883