STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aplp1Amyloid beta (A4) precursor-like protein 1. (704 aa)    
Predicted Functional Partners:
Sdhaf1
Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.
      
 0.837
LOC101156270
Uncharacterized protein.
    
 0.824
sorl1
Sortilin-related receptor, L(DLR class) A repeats containing.
    
 0.789
fkrp
Fukutin related protein.
     
 0.765
LOC101172288
Amyloid beta (A4) precursor protein b.
    
 
 0.764
APP
Amyloid beta precursor protein.
    
 
 0.764
hlcs
Holocarboxylase synthetase.
      
 0.723
snca
Uncharacterized protein; Belongs to the synuclein family.
    
 0.719
prodh2
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
      
 0.710
lrp10
Low density lipoprotein receptor-related protein 10.
    
 0.700
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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