STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ighmbp2Immunoglobulin mu DNA binding protein 2. (978 aa)    
Predicted Functional Partners:
yars1
Tyrosine--tRNA ligase.
      
 0.668
nelfe
Negative elongation factor complex member E.
    
   0.569
gdap1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
      
 0.559
gars1
Glycyl-tRNA synthetase.
      
 0.558
abt1
Activator of basal transcription 1.
    
 
 0.521
nthl1
Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.
 
      0.515
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
   
    0.487
rnps1
RNA binding protein S1, serine-rich domain.
      
 0.459
nelfa
Negative elongation factor complex member A.
   
   0.445
LOC101169939
RPGRIP1 like.
      
 0.445
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.