ppa2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ppa2

Pyrophosphatase (inorganic) 2. (342 aa)

Predicted Functional Partners:

lhpp

0.930

LOC101154892

0.906

H2LZ57_ORYLA

0.906

atp5f1c

0.806

atp6v0b

0.803

LOC101160076

0.802

ATP6V0C

0.770

LOC101159507

0.770

ATP5MC2

0.770

LOC101156015

0.770

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5MC2	ATP6V0C	ENSORLP00000028601	ENSORLP00000009034	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.440
ATP5MC2	H2LZ57_ORYLA	ENSORLP00000028601	ENSORLP00000011429	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	Pyrophosphatase (inorganic) 1a.	0.770
ATP5MC2	LOC101154892	ENSORLP00000028601	ENSORLP00000008496	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	Pyrophosphatase (inorganic) 1b.	0.770
ATP5MC2	LOC101156015	ENSORLP00000028601	ENSORLP00000039481	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase membrane subunit c locus 1.	0.904
ATP5MC2	LOC101159507	ENSORLP00000028601	ENSORLP00000014921	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.440
ATP5MC2	LOC101160076	ENSORLP00000028601	ENSORLP00000004661	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.977
ATP5MC2	atp5f1c	ENSORLP00000028601	ENSORLP00000021439	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase subunit gamma.	0.977
ATP5MC2	lhpp	ENSORLP00000028601	ENSORLP00000012110	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase.	0.714
ATP5MC2	ppa2	ENSORLP00000028601	ENSORLP00000008240	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	Pyrophosphatase (inorganic) 2.	0.770
ATP6V0C	ATP5MC2	ENSORLP00000009034	ENSORLP00000028601	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	0.440
ATP6V0C	H2LZ57_ORYLA	ENSORLP00000009034	ENSORLP00000011429	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Pyrophosphatase (inorganic) 1a.	0.770
ATP6V0C	LOC101154892	ENSORLP00000009034	ENSORLP00000008496	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Pyrophosphatase (inorganic) 1b.	0.770
ATP6V0C	LOC101156015	ENSORLP00000009034	ENSORLP00000039481	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase membrane subunit c locus 1.	0.440
ATP6V0C	LOC101159507	ENSORLP00000009034	ENSORLP00000014921	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.900
ATP6V0C	LOC101160076	ENSORLP00000009034	ENSORLP00000004661	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.942
ATP6V0C	atp5f1c	ENSORLP00000009034	ENSORLP00000021439	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit gamma.	0.922
ATP6V0C	atp6v0b	ENSORLP00000009034	ENSORLP00000022198	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	0.998
ATP6V0C	lhpp	ENSORLP00000009034	ENSORLP00000012110	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase.	0.674
ATP6V0C	ppa2	ENSORLP00000009034	ENSORLP00000008240	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Pyrophosphatase (inorganic) 2.	0.770
H2LZ57_ORYLA	ATP5MC2	ENSORLP00000011429	ENSORLP00000028601	Pyrophosphatase (inorganic) 1a.	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	0.770