Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174213Zinc finger protein 503. (561 aa)    
Predicted Functional Partners:
lrmda
Leucine rich melanocyte differentiation associated.
      
 0.721
DCAF7
DDB1 and CUL4 associated factor 7.
    
 
 0.649
LOC101166537
Cytochrome c oxidase assembly factor COX18.
      
 0.618
casc4
Cancer susceptibility candidate 4.
      
 0.599
gtpbp10
GTP-binding protein 10 (putative).
      
 0.586
gins3
GINS complex subunit 3.
      
 0.581
RNF220
Uncharacterized protein.
      
 0.535
fign
Fidgetin; Belongs to the AAA ATPase family.
      
 0.532
hif1an
Hypoxia inducible factor 1 subunit alpha inhibitor.
      
 0.529
barhl2
BarH-like homeobox 2.
      
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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