STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174213Zinc finger protein 503. (561 aa)    
Predicted Functional Partners:
hif1an
Hypoxia inducible factor 1 subunit alpha inhibitor.
      
 0.583
barhl2
BarH-like homeobox 2.
   
  
 0.562
fign
Fidgetin; Belongs to the AAA ATPase family.
      
 0.549
RNF220
Uncharacterized protein.
     
 0.545
LOC101162817
AAA domain-containing protein.
      
 0.514
EBF1
EBF transcription factor 1.
      
 0.513
igf2bp1
Insulin-like growth factor 2 mRNA binding protein 1.
      
 0.512
crlf1
Cytokine receptor-like factor 1a.
      
 0.487
gtpbp10
GTP-binding protein 10 (putative).
      
 0.469
casc4
Cancer susceptibility candidate 4.
      
 0.467
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.