STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef38Rho guanine nucleotide exchange factor (GEF) 38. (754 aa)    
Predicted Functional Partners:
LOC101170087
BAR domain-containing protein.
    
 
 0.670
LOC101167329
Bridging integrator 1a.
    
 
 0.670
bin2
Bridging integrator 2a.
    
 
 0.670
amph
Amphiphysin.
    
 
 0.670
LOC101158258
Bridging integrator 1b.
    
 
 0.670
LOC101167227
Heat shock protein 12A.
   
 
 0.636
hspa12b
Heat shock protein 12B.
   
 
 0.636
CDC42
Cell division cycle 42.
    
 0.627
LOC101164400
Uncharacterized protein.
    
 0.627
LOC101164658
Uncharacterized protein.
    
 0.588
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.