Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ncoa5Nuclear receptor coactivator 5. (621 aa)    
Predicted Functional Partners:
LOC101160447
RAN binding protein 2.
   
 0.936
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.917
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.916
nup133
Nucleoporin 133.
   
 0.910
nup155
Nucleoporin 155.
   
 0.909
nup205
Nucleoporin 205.
   
 0.909
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.908
H2LA82_ORYLA
Nucleoporin 88.
   
 0.907
NUP54
Nucleoporin 54.
   
 0.905
nup160
Nucleoporin 160.
   
 0.904
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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