STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163011Transcobalamin II. (429 aa)    
Predicted Functional Partners:
amn
Amnion associated transmembrane protein.
     
 0.720
lrp2
Low density lipoprotein receptor-related protein 2a.
   
 0.703
cubn
Cubilin (intrinsic factor-cobalamin receptor).
   
 0.663
LOC101156001
Lipase; Belongs to the AB hydrolase superfamily. Lipase family.
   
 
 0.621
LOC101161259
ATP-binding cassette, sub-family G (WHITE), member 4a.
   
  
 0.560
lmbrd1
LMBR1 domain containing 1.
      
 0.559
oaf
OAF homolog a (Drosophila).
      
 0.558
tatdn2
TatD DNase domain containing 2.
   
  
 0.515
LOC101165016
Solute carrier family 15 member 1a.
      
 0.502
LOC101160202
Solute carrier family 15 member 2.
      
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.