Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
LOC101163011Transcobalamin II. (429 aa)    
Predicted Functional Partners:
amn
Amnion associated transmembrane protein.
     
 0.892
cubn
Cubilin (intrinsic factor-cobalamin receptor).
    
 0.696
lmbrd1
LMBR1 domain containing 1.
      
 0.584
lrp2
Low density lipoprotein receptor-related protein 2a.
   
 0.573
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
     
  0.572
LOC101174278
Low density lipoprotein receptor adaptor protein 1a.
     
  0.572
LOC101156001
Lipase; Belongs to the AB hydrolase superfamily. Lipase family.
   
 
 0.557
LOC101168781
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 
 0.529
LOC101165737
Elastase 3 like; Belongs to the peptidase S1 family.
   
 
 0.528
LOC101157444
Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 3.
    
 
 0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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