Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175555Tyrosine-protein kinase. (1112 aa)    
Predicted Functional Partners:
LOC101173855
Signal transducer and activator of transcription.
   
 0.945
LOC101162184
Signal transducer and activator of transcription.
   
 0.938
stat3
Signal transducer and activator of transcription.
   
 0.934
LOC101154761
Signal transducer and activator of transcription.
   
 0.926
LOC101161521
Signal transducer and activator of transcription.
   
 0.925
ifngr1
Uncharacterized protein.
     
 0.909
LOC101163082
Signal transducer and activator of transcription.
   
 0.906
LOC101168657
Signal transducer and activator of transcription.
   
 0.906
ifngr1l
Fibronectin type-III domain-containing protein.
     
 0.905
socs1
Suppressor of cytokine signaling 1.
    
 0.873
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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