STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158393Matrix metallopeptidase 25b. (567 aa)    
Predicted Functional Partners:
timp-2b
Tissue inhibitor of metalloproteinase-2b.
   
 0.625
timp2
Tissue inhibitor of metalloproteinase-2a.
   
 0.625
timp3
NTR domain-containing protein.
   
 0.577
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.458
coll
Collagenase.
  
0.429
LOC101156910
Matrix metallopeptidase 20a (enamelysin).
  
0.426
LOC101156669
Matrix metallopeptidase 13b.
  
0.420
mmp2
Uncharacterized protein.
  
0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.