Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nup214Nup214_FG domain-containing protein. (1974 aa)    
Predicted Functional Partners:
H2LA82_ORYLA
Nucleoporin 88.
   
 0.998
nup153
Nucleoporin 153.
   
 0.997
nup62
Nsp1_C domain-containing protein.
   
 0.996
nup98
Nucleoporin 98.
   
 0.995
rae1
Ribonucleic acid export 1.
    
 0.993
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.989
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.987
LOC101160447
RAN binding protein 2.
   
 0.987
nup188
Nucleoporin 188.
   
 0.986
nup155
Nucleoporin 155.
   
 0.986
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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