STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175513Carbonic anhydrase XVb; Belongs to the alpha-carbonic anhydrase family. (312 aa)    
Predicted Functional Partners:
rgs14
Regulator of G protein signaling 14a.
   
  
 0.674
rpf2
Ribosome production factor 2 homolog.
   
 
 0.616
ENSORLP00000040614
Tudor domain containing 12.
   
  
 0.587
slc26a5
Solute carrier family 26 member 5.
   
  
 0.549
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.519
LOC101168556
Uncharacterized protein; Belongs to the GST superfamily.
      
 0.519
LOC101168055
Uncharacterized protein; Belongs to the GST superfamily.
      
 0.519
LOC101167553
Glutathione S-transferase rho; Belongs to the GST superfamily.
      
 0.499
LOC101168304
Glutathione S-transferase rho; Belongs to the GST superfamily.
      
 0.499
nanos3
NANOS3; Belongs to the nanos family.
   
  
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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