Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fanceFA complementation group E. (503 aa)    
Predicted Functional Partners:
fancg
Uncharacterized protein.
   
 0.997
rpl31
Ribosomal protein L31.
  
 0.996
fancf
FA complementation group F.
    
 0.996
rpl8
60S ribosomal protein L8.
  
 0.996
rpl30
Ribosomal protein L30.
   
 0.996
fancm
Uncharacterized protein.
    
 0.996
fau
40S ribosomal protein S30.
   
 0.996
rpl34
Ribosomal protein L34.
   
 0.996
fancb
FA complementation group B.
    
 0.996
fancc
FA complementation group C.
    
 0.996
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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