Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abcb3Uncharacterized protein. (736 aa)    
Predicted Functional Partners:
tapbp
Uncharacterized protein.
   
 0.990
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
  
  
 
0.968
tapbpl
TAP binding protein like.
   
 
 0.916
LOC101165513
Transporter associated with antigen processing, subunit type t, teleost specific.
  
  
 
0.904
psmb9-like
Proteasome subunit, beta type 9-like.
 
 
 0.863
LOC101160304
Calreticulin.
   
 0.849
LOC101162115
Calreticulin.
   
 0.849
LOC101169735
Calreticulin.
   
 0.849
pdia3
Protein disulfide-isomerase.
   
 0.841
psmb8
Proteasome subunit beta.
 
 
 0.762
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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