STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcb3Uncharacterized protein. (736 aa)    
Predicted Functional Partners:
tapbp
Uncharacterized protein.
   
 0.984
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
  
 
0.968
pdia3
Protein disulfide-isomerase.
   
 0.940
LOC101160304
Calreticulin.
   
 0.935
LOC101169735
Calreticulin.
   
 0.935
LOC101165241
Protein disulfide-isomerase.
   
 0.922
LOC101165513
Transporter associated with antigen processing, subunit type t, teleost specific.
  
  
 
0.904
psmb9-like
Proteasome subunit, beta type 9-like.
 
 
 0.793
psmb8
Proteasome subunit beta.
 
 
 0.772
psmb9
Proteasome subunit beta type-9; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides (By similarity).
 
 
 0.671
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.