STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165381Cell cycle associated protein 1a. (638 aa)    
Predicted Functional Partners:
g3bp2
Zgc:56304.
   
 
 0.746
g3bp1
GTPase activating protein (SH3 domain) binding protein 1.
   
 
 0.741
cct2
Uncharacterized protein.
   
 
 0.626
cct8
Chaperonin containing TCP1, subunit 8 (theta).
   
  
 0.619
cct6a
Chaperonin containing TCP1, subunit 6A (zeta 1).
   
 
 0.597
dtymk
Deoxythymidylate kinase (thymidylate kinase).
   
  
 0.583
snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
   
 
 0.578
LOC101167120
Solute carrier family 25 member 39; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.568
pcnp
PEST proteolytic signal containing nuclear protein.
      
 0.568
med30
Mediator complex subunit 30.
      
 0.568
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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