Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165381Cell cycle associated protein 1a. (638 aa)    
Predicted Functional Partners:
g3bp1
GTPase activating protein (SH3 domain) binding protein 1.
   
 
 0.880
g3bp2
Zgc:56304.
   
 
 0.858
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.778
fxr1
Fragile X mental retardation, autosomal homolog 1.
   
 
 0.755
fmr1
Fragile X mental retardation 1.
   
 
 0.754
LOC101154983
Fragile X mental retardation, autosomal homolog 2.
   
 
 0.738
Nufip2
Nuclear FMR1 interacting protein 2.
    
 
 0.688
cct2
Uncharacterized protein.
   
 
 0.683
snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
   
 
 0.666
cct8
Chaperonin containing TCP1, subunit 8 (theta).
   
  
 0.658
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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