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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174692Potassium large conductance calcium-activated channel, subfamily M, alpha member 1a. (1239 aa)    
Predicted Functional Partners:
KCNMB4
Uncharacterized protein.
    
 0.980
LOC101165257
Potassium large conductance calcium-activated channel, subfamily M, beta member 2.
    
 0.944
LOC101158266
KcnmB2_inactiv domain-containing protein.
    
 0.944
LOC101160964
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.929
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.929
LOC101163742
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
    
 0.929
LOC101170876
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.929
prkg1
cGMP-dependent protein kinase.
   
 
 0.926
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
   
 
 0.453
LOC101173735
Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4.
      
 0.448
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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