STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160659Collagen beta(1-O)galactosyltransferase 1. (610 aa)    
Predicted Functional Partners:
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.947
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.947
Plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.947
coll
Collagenase.
   
 
 0.650
LOC101162553
Collagen, type VI, alpha 2.
   
 0.624
LOC101170800
Uncharacterized protein.
   
 0.624
LOC101156669
Matrix metallopeptidase 13b.
   
 
 0.517
LOC101156910
Matrix metallopeptidase 20a (enamelysin).
   
 
 0.517
LOC101171843
Uncharacterized protein.
    
  0.503
colq
Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.
    
  0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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