STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168738Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (218 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
    
 0.729
pex3
Peroxisomal biogenesis factor 3.
     
 0.715
pex13
Peroxisomal biogenesis factor 13.
     
 0.691
H2LE26_ORYLA
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
 
0.689
LOC101162919
Tight junction protein 3; Belongs to the MAGUK family.
   
 0.688
LOC101160233
Tight junction protein 1b; Belongs to the MAGUK family.
   
 0.688
LOC101166369
Tight junction protein 1a; Belongs to the MAGUK family.
   
 0.688
H2LCN0_ORYLA
Zgc:136892.
  
 
 
0.683
gdap1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
    
 0.680
LOC101159211
Uncharacterized protein.
  
 
 
0.678
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.