STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfap2aTranscription factor AP-2 alpha. (431 aa)    
Predicted Functional Partners:
tfap2d
Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).
   
  0.839
snai2
Snail family zinc finger 2.
      
 0.694
six1
SIX homeobox 1a.
      
 0.692
LOC101156882
BTB domain-containing protein.
   
 0.689
KCTD15
Potassium channel tetramerization domain containing 15.
   
 0.689
KCTD1
Potassium channel tetramerization domain containing 1.
   
 0.689
hhip
Hedgehog interacting protein.
      
 0.642
LOC101158550
Nucleophosmin 1a.
   
  0.631
wwox
WW domain containing oxidoreductase.
    
 0.625
nrp1
Neuropilin; Belongs to the neuropilin family.
      
 0.614
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.