STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfap2aTranscription factor AP-2 alpha. (431 aa)    
Predicted Functional Partners:
wwox
WW domain containing oxidoreductase.
    
 0.653
LOC101156882
BTB domain-containing protein.
   
 0.626
KCTD15
Potassium channel tetramerization domain containing 15.
   
 0.626
KCTD1
Potassium channel tetramerization domain containing 1.
   
 0.626
yeats4
YEATS domain containing 4.
    
 0.590
tfec
Transcription factor EC.
      
 0.575
dek
DEK proto-oncogene.
    
 0.562
LOC101158550
Nucleophosmin 1a.
   
  0.560
LOC101158386
Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.527
hhip
Hedgehog interacting protein.
      
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.