STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psmb9Proteasome subunit beta type-9; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides (By similarity). (216 aa)    
Predicted Functional Partners:
psmb4
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 0.999
psmb2
Proteasome subunit beta.
   
 0.999
psmb3
Proteasome subunit beta 3.
   
 0.999
psmb1
Proteasome subunit beta.
   
 0.998
psma2
Proteasome subunit alpha type.
   
 0.997
psma3
Proteasome subunit alpha type.
   
 0.997
psma5
Proteasome subunit alpha type.
   
 0.997
psmb8
Proteasome subunit beta.
  
0.997
psma1
Proteasome endopeptidase complex.
   
 0.996
psma4
Proteasome subunit alpha type.
   
 0.996
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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