STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kbtbd4Kelch repeat and BTB (POZ) domain containing 4. (545 aa)    
Predicted Functional Partners:
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.921
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.921
nudcd3
NudC domain containing 3.
    
   0.884
ctdnep1
CTD nuclear envelope phosphatase 1b.
   
  
 0.767
cacul1
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.733
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.729
fh
Fumarate hydratase.
      
 0.713
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.690
klhl24
Kelch-like family member 24a.
    
 
 0.672
kdm1a
Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.
    
 
 0.664
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.