STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vac14Vac14 homolog (S. cerevisiae). (790 aa)    
Predicted Functional Partners:
FIG4
FIG4 phosphoinositide 5-phosphatase.
    
 0.982
pikfyve
Phosphoinositide kinase, FYVE finger containing.
    
 0.982
dipk2a
Divergent protein kinase domain 2Ab.
    
 0.968
rad54l
RAD54 like.
 
  
   0.900
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
     
 0.751
yars1
Tyrosine--tRNA ligase.
      
 0.690
stk40
Serine/threonine kinase 40.
   
 
 0.671
PIK3R6
Phosphoinositide-3-kinase regulatory subunit 6.
  
  
  0.620
tmem86a
Transmembrane protein 86A.
      
 0.618
WIPI1
Uncharacterized protein.
    
 
 0.605
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.