STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vac14Vac14 homolog (S. cerevisiae). (790 aa)    
Predicted Functional Partners:
FIG4
FIG4 phosphoinositide 5-phosphatase.
   
 0.999
pikfyve
Phosphoinositide kinase, FYVE finger containing.
    
 0.999
dipk2a
Divergent protein kinase domain 2Ab.
   
 0.931
stk40
Serine/threonine kinase 40.
   
 
 0.915
rad54l
RAD54 like.
 
  
   0.899
WIPI1
Uncharacterized protein.
    
 
 0.790
wipi2
WD repeat domain, phosphoinositide interacting 2.
    
 
 0.790
LOC101159269
WD repeat domain, phosphoinositide interacting 1.
    
 
 0.790
yars1
Tyrosine--tRNA ligase.
      
 0.768
polr3e
Polymerase (RNA) III (DNA directed) polypeptide E.
      
 0.767
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.