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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kirrel2Kirre like nephrin family adhesion molecule 3, like. (753 aa)    
Predicted Functional Partners:
nphs1
NPHS1 adhesion molecule, nephrin.
   
0.922
tspan10
Tetraspanin.
    
 0.636
ca10
Carbonic anhydrase Xa; Belongs to the alpha-carbonic anhydrase family.
      
 0.588
nck1
Cytoplasmic protein.
    
 0.557
nck2
Cytoplasmic protein.
    
 0.557
slc2a11b
Solute carrier family 2 member 11b; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
 
 0.533
ptn
Pleiotrophin.
      
 0.439
pmel
Premelanosome protein a.
      
 0.436
dct
Dopachrome tautomerase.
    
 0.418
LOC101160233
Tight junction protein 1b; Belongs to the MAGUK family.
    
 0.407
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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