Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddb2Damage-specific DNA binding protein 2. (488 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 0.999
cops2
COP9 signalosome subunit 2.
    
 0.995
xpc
Xeroderma pigmentosum, complementation group C.
   
 0.993
USP24
Ubiquitin specific peptidase 24; Belongs to the peptidase C19 family.
    
 0.990
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
 0.990
cops5
COP9 signalosome subunit 5.
    
 0.988
cops8
COP9 signalosome subunit 8.
    
 0.987
dda1
DET1 and DDB1 associated 1.
    
 0.987
gps1
G protein pathway suppressor 1.
    
  0.987
cop1
COP1 E3 ubiquitin ligase.
    
 0.986
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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