STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsx1Developmental transcription factor. (243 aa)    
Predicted Functional Partners:
wasf3
WASP family member 3b.
      
 0.774
gtf3a
General transcription factor IIIA, b.
    
 0.633
mtif3
Mitochondrial translational initiation factor 3.
      
 0.610
tagln3
Transgelin; Belongs to the calponin family.
   
  
 0.608
shisa2
Shisa family member 2b.
      
 0.600
ENSORLP00000029709
General transcription factor IIIAa.
    
 0.593
mpz
Myelin protein zero.
      
 0.568
abhd10
Transgelin 3b.
     
 0.491
pbx1
Homeobox domain-containing protein.
   
 0.482
LOC101160104
Pre-B-cell leukemia homeobox 1b.
    
 0.460
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.