Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gsx1Developmental transcription factor. (243 aa)    
Predicted Functional Partners:
ENSORLP00000029709
General transcription factor IIIAa.
    
 
 0.721
gtf3a
General transcription factor IIIA, b.
    
 
 0.720
abhd10
Transgelin 3b.
      
 0.691
wasf3
WASP family member 3b.
      
 0.650
shisa2
Shisa family member 2b.
      
 0.631
bmpr1b
Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 
 0.553
LOC100049510
Si:dkey-208k4.2.
    
 
 0.551
tagln3
Transgelin; Belongs to the calponin family.
      
 0.524
sim1
SIM bHLH transcription factor 1.
      
 0.511
mtif3
Mitochondrial translational initiation factor 3.
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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