Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nphs1NPHS1 adhesion molecule, nephrin. (1180 aa)    
Predicted Functional Partners:
LOC101166708
NPHS2 stomatin family member, podocin.
   
 0.936
LOC101167736
Kirre like nephrin family adhesion molecule 1b.
   
 0.903
kirrel2
Kirre like nephrin family adhesion molecule 3, like.
   
 0.903
LOC101168819
Kirre like nephrin family adhesion molecule 1a.
   
 0.903
KIRREL3
Kirre like nephrin family adhesion molecule 3.
   
 0.903
sh3kbp1
SH3-domain kinase binding protein 1.
    
 0.870
sh3d21
SH3 domain containing 21.
    
 0.870
cd2ap
CD2-associated protein.
    
 0.870
plce1
Phospholipase C, epsilon 1.
      
 0.761
nck1
Cytoplasmic protein.
    
 0.757
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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