STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nphs1NPHS1 adhesion molecule, nephrin. (1180 aa)    
Predicted Functional Partners:
LOC101167736
Kirre like nephrin family adhesion molecule 1b.
   
0.922
kirrel2
Kirre like nephrin family adhesion molecule 3, like.
   
0.922
LOC101168819
Kirre like nephrin family adhesion molecule 1a.
   
0.922
KIRREL3
Kirre like nephrin family adhesion molecule 3.
   
0.922
nck1
Cytoplasmic protein.
    
 0.772
nck2
Cytoplasmic protein.
    
 0.772
sh3kbp1
SH3-domain kinase binding protein 1.
    
 0.719
sh3d21
SH3 domain containing 21.
    
 0.719
cd2ap
CD2-associated protein.
    
 0.719
LOC101166708
NPHS2 stomatin family member, podocin.
    
 0.712
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.