Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc124Coiled-coil domain containing 124. (220 aa)    
Predicted Functional Partners:
eif3j
Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
    
 
 0.832
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
    
 
 0.722
rps19
Ribosomal protein S19.
   
 
 0.712
LOC101158186
SERPINE1 mRNA binding protein 1a.
   
 
 0.680
rps5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
 
 0.668
rpl8
60S ribosomal protein L8.
   
 
 0.646
Rpl35
Ribosomal protein L35.
   
 
 0.640
LOC101155636
SERPINE1 mRNA binding protein 1b.
   
 
 0.634
rps28
Ribosomal protein S28.
   
   0.630
ppid
Peptidylprolyl isomerase D.
    
 
 0.625
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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