STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX41Uncharacterized protein. (614 aa)    
Predicted Functional Partners:
sting1
Transmembrane protein 173.
    
 0.986
NKAPL
NFKB activating protein like.
    
 0.974
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.956
slu7
SLU7 homolog, splicing factor.
    
  0.954
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.950
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.943
cactin
Cactin.
    
 0.931
fam32a
Family with sequence similarity 32 member A.
    
 0.931
ppwd1
Peptidylprolyl isomerase domain and WD repeat containing 1.
   
 0.917
c9h9orf78
Zgc:103692.
    
  0.911
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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