Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhx3Uncharacterized protein. (401 aa)    
Predicted Functional Partners:
ISL2
ISL LIM homeobox 2a.
   
 0.801
ISL2-2
Uncharacterized protein.
   
 0.801
isl1
Uncharacterized protein.
   
 0.801
LOC101162780
LIM domain binding 1a.
    
 0.742
ldb2
LIM domain binding 2a.
    
 0.742
LOC101158085
LIM-domain binding 1b.
    
 0.742
pou1f1
POU domain protein.
   
 
 0.707
ALX3
ALX homeobox 3.
   
 0.699
LOC101165795
Single stranded DNA binding protein 3b.
    
 
 0.662
SSBP4
Single stranded DNA binding protein 4.
    
 
 0.662
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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