STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105354602Prostaglandin E receptor 1c (subtype EP1). (361 aa)    
Predicted Functional Partners:
LOC101157684
Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.
    
  0.789
LOC101168718
Uncharacterized protein.
    
 0.772
LOC101168962
Guanine nucleotide binding protein (G protein), alpha 14a.
    
 0.772
LOC101161353
Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).
    
 0.772
LOC101167719
Uncharacterized protein.
    
  0.704
LOC101167158
Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family.
     
 0.631
spaca6
Ig-like domain-containing protein.
      
 0.451
GNRHR
Gonadotropin releasing hormone receptor.
      
 0.406
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.