STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105354602Prostaglandin E receptor 1c (subtype EP1). (361 aa)    
Predicted Functional Partners:
LOC101168718
Uncharacterized protein.
    
 0.731
LOC101168962
Guanine nucleotide binding protein (G protein), alpha 14a.
    
 0.731
LOC101161353
Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).
    
 0.731
LOC101158934
Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).
    
 0.731
LOC101167158
Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family.
      
 0.721
LOC101167719
Uncharacterized protein.
    
  0.691
LOC101157684
Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.
    
  0.691
ptges2
Prostaglandin E synthase 2-like.
      
 0.489
ptgs2
EGF-like domain-containing protein.
    
 
 0.406
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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