STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfkbidANK_REP_REGION domain-containing protein. (453 aa)    
Predicted Functional Partners:
Sdhaf1
Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.
      
 0.890
hlcs
Holocarboxylase synthetase.
      
 0.852
LOC101156270
Uncharacterized protein.
    
 0.789
nfkb2
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).
   
 
 0.754
nfkb1
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.
   
 
 0.754
prodh2
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
   
  
 0.749
REL
REL proto-oncogene, NF-kB subunit.
   
 0.713
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
   
 0.713
LOC101158728
V-rel avian reticuloendotheliosis viral oncogene homolog A.
   
 0.713
setd6
N-lysine methyltransferase SETD6; Protein-lysine N-methyltransferase. Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SETD6 subfamily.
    
 0.679
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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