nfkbid protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nfkbid

ANK_REP_REGION domain-containing protein. (453 aa)

Predicted Functional Partners:

Sdhaf1

0.844

hlcs

0.772

LOC101156270

0.729

prodh2

0.684

aplp1

0.631

ripk1

0.572

themis2

0.525

fbxl5

0.523

pik3ip1

0.518

trim59

0.518

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156270	Sdhaf1	ENSORLP00000045059	ENSORLP00000039981	Uncharacterized protein.	Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.	0.825
LOC101156270	aplp1	ENSORLP00000045059	ENSORLP00000008229	Uncharacterized protein.	Amyloid beta (A4) precursor-like protein 1.	0.825
LOC101156270	hlcs	ENSORLP00000045059	ENSORLP00000006794	Uncharacterized protein.	Holocarboxylase synthetase.	0.637
LOC101156270	nfkbid	ENSORLP00000045059	ENSORLP00000008432	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.729
LOC101156270	prodh2	ENSORLP00000045059	ENSORLP00000044959	Uncharacterized protein.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.631
Sdhaf1	LOC101156270	ENSORLP00000039981	ENSORLP00000045059	Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.	Uncharacterized protein.	0.825
Sdhaf1	aplp1	ENSORLP00000039981	ENSORLP00000008229	Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.	Amyloid beta (A4) precursor-like protein 1.	0.828
Sdhaf1	hlcs	ENSORLP00000039981	ENSORLP00000006794	Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.	Holocarboxylase synthetase.	0.706
Sdhaf1	nfkbid	ENSORLP00000039981	ENSORLP00000008432	Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.	ANK_REP_REGION domain-containing protein.	0.844
Sdhaf1	prodh2	ENSORLP00000039981	ENSORLP00000044959	Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.724
aplp1	LOC101156270	ENSORLP00000008229	ENSORLP00000045059	Amyloid beta (A4) precursor-like protein 1.	Uncharacterized protein.	0.825
aplp1	Sdhaf1	ENSORLP00000008229	ENSORLP00000039981	Amyloid beta (A4) precursor-like protein 1.	Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.	0.828
aplp1	hlcs	ENSORLP00000008229	ENSORLP00000006794	Amyloid beta (A4) precursor-like protein 1.	Holocarboxylase synthetase.	0.641
aplp1	nfkbid	ENSORLP00000008229	ENSORLP00000008432	Amyloid beta (A4) precursor-like protein 1.	ANK_REP_REGION domain-containing protein.	0.631
aplp1	prodh2	ENSORLP00000008229	ENSORLP00000044959	Amyloid beta (A4) precursor-like protein 1.	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.	0.598
fbxl5	nfkbid	ENSORLP00000020228	ENSORLP00000008432	F-box and leucine-rich repeat protein 5.	ANK_REP_REGION domain-containing protein.	0.523
fbxl5	pik3ip1	ENSORLP00000020228	ENSORLP00000008529	F-box and leucine-rich repeat protein 5.	Phosphoinositide-3-kinase interacting protein 1.	0.587
fbxl5	ripk1	ENSORLP00000020228	ENSORLP00000026458	F-box and leucine-rich repeat protein 5.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.510
fbxl5	themis2	ENSORLP00000020228	ENSORLP00000039696	F-box and leucine-rich repeat protein 5.	Thymocyte selection associated family member 2.	0.606
fbxl5	trim59	ENSORLP00000020228	ENSORLP00000040183	F-box and leucine-rich repeat protein 5.	Tripartite motif containing 59.	0.509