STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhbdd3Rhomboid domain containing 3. (353 aa)    
Predicted Functional Partners:
bloc1s3
Biogenesis of lysosomal organelles complex-1, subunit 3.
      
 0.755
pibf1
Progesterone immunomodulatory binding factor 1.
      
 0.739
pld6
Phospholipase D family, member 6.
   
  
 0.706
dnajc18
DnaJ (Hsp40) homolog, subfamily C, member 18.
      
 0.644
Rhbdd2
Rhomboid domain-containing protein.
      
 0.613
zmat5
Zinc finger, matrin-type 5.
      
 0.600
rasl10a
RAS-like, family 10, member A.
      
 0.599
gas2l1
Growth arrest-specific 2 like 1.
    
 
 0.598
ubac2
UBA domain containing 2.
      
 0.571
LOC101171246
Solute carrier family 26 member 10.
    
 
 0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.