STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhbdd3Rhomboid domain containing 3. (353 aa)    
Predicted Functional Partners:
fam118b
Family with sequence similarity 118 member B.
    
 
 0.589
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.586
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.586
pld6
Phospholipase D family, member 6.
   
  
 0.573
Rhbdd2
Rhomboid domain-containing protein.
      
 0.560
bbs9
Bardet-Biedl syndrome 9.
      
 0.559
LOC101156981
Glycerol-3-phosphate acyltransferase 2, mitochondrial.
      
 0.558
LOC101170803
Receptor expression-enhancing protein.
      
 0.472
LOC101164298
Receptor expression-enhancing protein.
      
 0.472
dnajc18
DnaJ (Hsp40) homolog, subfamily C, member 18.
      
 0.451
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.