STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159141Proline rich 12a. (2620 aa)    
Predicted Functional Partners:
ccdc177
Uncharacterized protein.
      
 0.645
Myo15b
Myosin XVB.
      
 0.645
LOC105354659
Proline rich Gla (G-carboxyglutamic acid) 2.
      
 0.613
prr16
Proline rich 16.
      
 0.582
pagr1
PAXIP1 associated glutamate-rich protein 1.
      
 0.536
INSC
INSC spindle orientation adaptor protein.
   
  
 0.519
scaf1
SR-related CTD-associated factor 1.
   
  
 0.512
hmmr
Hyaluronan-mediated motility receptor (RHAMM).
      
 0.478
sh3pxd2b
SH3 and PX domains 2B.
      
 0.464
tp53bp1
Tumor protein p53 binding protein, 1.
    
   0.462
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.