STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brinp1Bone morphogenetic protein/retinoic acid inducible neural-specific 1. (761 aa)    
Predicted Functional Partners:
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 
 0.962
smpdl3a
Acid sphingomyelinase-like phosphodiesterase.
      
 0.866
ENSORLP00000040040
Uncharacterized protein.
      
 0.743
LOC101168279
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
      
 0.653
wdr35
WD repeat-containing protein 35.
      
 0.637
dolpp1
Dolichyldiphosphatase 1.
      
 0.613
dusp12
Dual specificity phosphatase 12.
      
 0.604
miga2
Mitoguardin 2.
      
 0.579
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
      
 0.535
astn1
Astrotactin 1.
   
  
 0.534
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.