H2LQV6_ORYLA protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2LQV6_ORYLA

Uncharacterized protein. (160 aa)

Predicted Functional Partners:

MYL2

0.981

MYL2-2

0.981

LOC101167500

0.967

LOC101163661

0.965

LOC101164155

0.965

LOC101157595

0.965

LOC101158198

0.965

LOC100125431

0.965

vmhc

0.965

H2MLX5_ORYLA

0.965

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2LQV6_ORYLA	H2MLX5_ORYLA	ENSORLP00000008451	ENSORLP00000019711	Uncharacterized protein.	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.965
H2LQV6_ORYLA	LOC100125431	ENSORLP00000008451	ENSORLP00000007990	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.965
H2LQV6_ORYLA	LOC101157595	ENSORLP00000008451	ENSORLP00000007660	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.965
H2LQV6_ORYLA	LOC101158198	ENSORLP00000008451	ENSORLP00000007758	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.965
H2LQV6_ORYLA	LOC101163661	ENSORLP00000008451	ENSORLP00000002482	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.965
H2LQV6_ORYLA	LOC101164155	ENSORLP00000008451	ENSORLP00000002484	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.965
H2LQV6_ORYLA	LOC101167500	ENSORLP00000008451	ENSORLP00000020004	Uncharacterized protein.	Myosin, light chain 1, alkali; skeletal, fast.	0.967
H2LQV6_ORYLA	MYL2	ENSORLP00000008451	ENSORLP00000019980	Uncharacterized protein.	Myosin, light chain 2b, regulatory, cardiac, slow.	0.981
H2LQV6_ORYLA	MYL2-2	ENSORLP00000008451	ENSORLP00000027432	Uncharacterized protein.	Myosin light chain 2.	0.981
H2LQV6_ORYLA	vmhc	ENSORLP00000008451	ENSORLP00000016597	Uncharacterized protein.	Ventricular myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.965
H2MLX5_ORYLA	H2LQV6_ORYLA	ENSORLP00000019711	ENSORLP00000008451	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.965
H2MLX5_ORYLA	LOC100125431	ENSORLP00000019711	ENSORLP00000007990	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.901
H2MLX5_ORYLA	LOC101157595	ENSORLP00000019711	ENSORLP00000007660	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.900
H2MLX5_ORYLA	LOC101158198	ENSORLP00000019711	ENSORLP00000007758	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.901
H2MLX5_ORYLA	LOC101163661	ENSORLP00000019711	ENSORLP00000002482	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.901
H2MLX5_ORYLA	LOC101164155	ENSORLP00000019711	ENSORLP00000002484	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.901
H2MLX5_ORYLA	LOC101167500	ENSORLP00000019711	ENSORLP00000020004	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin, light chain 1, alkali; skeletal, fast.	0.974
H2MLX5_ORYLA	MYL2	ENSORLP00000019711	ENSORLP00000019980	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin, light chain 2b, regulatory, cardiac, slow.	0.701
H2MLX5_ORYLA	MYL2-2	ENSORLP00000019711	ENSORLP00000027432	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin light chain 2.	0.698
H2MLX5_ORYLA	vmhc	ENSORLP00000019711	ENSORLP00000016597	Myosin, heavy chain 6, cardiac muscle, alpha; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Ventricular myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.901