STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164878Cytochrome P450, family 2, subfamily R, polypeptide 1; Belongs to the cytochrome P450 family. (512 aa)    
Predicted Functional Partners:
LOC101172325
Cytochrome P450, family 27, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family.
  
0.952
LOC101165632
Cytochrome P450, family 24, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
  
0.937
dhcr7
7-dehydrocholesterol reductase.
   
 0.677
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.653
copb1
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 
 0.613
vdralpha
Uncharacterized protein.
   
 
 0.597
cyp3a40
Cytochrome P450 3A40.
  
0.556
psma1
Proteasome endopeptidase complex.
    
 
 0.555
cyp3a
Uncharacterized protein.
  
0.555
bard1
BRCA1 associated RING domain 1.
    
 0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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