STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbckTBC1 domain containing kinase. (889 aa)    
Predicted Functional Partners:
c6h12orf4
Zgc:154077.
    
 
 0.976
LOC101173653
Fibronectin type-III domain-containing protein.
    
 
 0.916
LOC101161305
Tumor suppressor 2, mitochondrial calcium regulator b.
    
   0.895
ppp1r21
Protein phosphatase 1, regulatory subunit 21.
   
 
 0.822
nme6
Nucleoside diphosphate kinase.
   
  
 0.727
LOC101175475
Canopy FGF signaling regulator 2.
      
 0.716
LOC101164593
RRM domain-containing protein.
    
   0.715
POLR2E
RNA polymerase II subunit E.
      
 0.691
CDH8
Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.623
PLCB1
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
      
 0.612
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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