STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vcpip1Valosin containing protein (p97)/p47 complex interacting protein 1. (1197 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.986
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.980
ubxn7
UBX domain protein 7.
   
 
 0.966
ubxn2a
UBX domain protein 2A.
   
 
 0.963
nsfl1c
NSFL1 (p97) cofactor (p47).
   
 
 0.953
faf2
Fas associated factor family member 2.
    
 
 0.850
sgk3
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 
 0.840
faap100
Si:dkey-57h18.1.
    
 
 0.833
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.833
sprtn
SprT-like N-terminal domain.
    
 
 0.820
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.