Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161349TLC domain containing 4a. (265 aa)    
Predicted Functional Partners:
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.635
rassf3
Ras association domain family member 3.
      
 0.554
spag17
Uncharacterized protein.
    
 
 0.543
ccdc189
Uncharacterized protein.
    
 
 0.543
H2N0U4_ORYLA
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.512
noct
Nocturnin a.
    
 
 0.492
LOC101174545
Si:dkey-69o16.5.
      
 0.464
nrip2
Nuclear receptor interacting protein 2.
      
 0.464
sbf2
SET binding factor 2.
      
 0.463
sbf1
SET binding factor 1.
      
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.