Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC101162149SIX homeobox 9. (220 aa)    
Predicted Functional Partners:
LOC100049216
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.678
eya4
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.671
LOC101169441
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.671
eya1
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
   
 0.671
fzd3
Frizzled class receptor 3a; Belongs to the G-protein coupled receptor Fz/Smo family.
   
  
 0.502
FZD3
Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.
   
  
 0.502
snai2
Snail family zinc finger 2.
    
 
 0.466
H2LDU0_ORYLA
Paired domain-containing protein.
  
  
 0.446
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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