STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100125495Beta-carotene oxygenase 1. (522 aa)    
Predicted Functional Partners:
aldh1a2
Retinaldehyde dehydrogenase type2; Belongs to the aldehyde dehydrogenase family.
   
 
 0.931
aox1
Aldehyde oxidase beta.
   
 
 0.917
dhrs3
Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.916
dhrs4
Uncharacterized protein.
     
 0.915
LOC100125487
Beta-carotene oxygenase 1, like.
  
  
0.905
sdr16c5
Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.904
adh5
S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
   
 
 0.903
LOC101172875
Uncharacterized protein.
   
 
 0.903
adh5-2
PKS_ER domain-containing protein.
   
 
 0.903
LOC101172385
PKS_ER domain-containing protein.
   
 
 0.903
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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