STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clptm1CLPTM1 regulator of GABA type A receptor forward trafficking. (631 aa)    
Predicted Functional Partners:
ddx11
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11.
    
 
 0.739
mad1l1
Mitotic arrest deficient 1 like 1.
    
 
 0.727
mad2l1
HORMA domain-containing protein.
    
   0.717
LOC101171005
Nuclear factor of activated T cells 2a.
      
 0.704
smc3
Structural maintenance of chromosomes protein.
    
   0.629
ncln
Nicalin.
   
  
 0.620
smc1b
Structural maintenance of chromosomes protein.
    
   0.609
smc1a
Structural maintenance of chromosomes protein.
    
   0.609
ENSORLP00000033948
Homeobox A5a.
      
 0.579
smpd4
Sphingomyelin phosphodiesterase 4.
      
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.